define([
    "utils",
    "classes/Extension",
    "text!html/mathJaxSettingsBlock.html",
    "libs/MathJax",
], function(utils, Extension, mathJaxSettingsBlockHTML) {
	
	var mathJax = new Extension("mathJax", "MathJax", true);
	mathJax.settingsBlock = mathJaxSettingsBlockHTML;
    mathJax.defaultConfig = {
        tex: "{}",
        tex2jax: '{ inlineMath: [["$","$"],["\\\\\\\\(","\\\\\\\\)"]], displayMath: [["$$","$$"],["\\\\[","\\\\]"]], processEscapes: true }'
    };

    mathJax.onLoadSettings = function() {
        utils.setInputValue("#input-mathjax-config-tex", mathJax.config.tex);
        utils.setInputValue("#input-mathjax-config-tex2jax", mathJax.config.tex2jax);
    };

    mathJax.onSaveSettings = function(newConfig, event) {
        newConfig.tex = utils.getInputJsValue("#input-mathjax-config-tex", event);
        newConfig.tex2jax = utils.getInputJsValue("#input-mathjax-config-tex2jax", event);
    };
	
    mathJax.onReady = function() {
        eval("var tex = " + mathJax.config.tex);
        eval("var tex2jax = " + mathJax.config.tex2jax);
        MathJax.Hub.Config({
            "HTML-CSS": {
                preferredFont: "TeX",
                availableFonts: [
                    "STIX",
                    "TeX"
                ],
                linebreaks: {
                    automatic: true
                },
                EqnChunk: 10,
                imageFont: null
            },
            tex2jax: tex2jax,
            TeX: $.extend({
                noUndefined: {
                    attributes: {
                        mathcolor: "red",
                        mathbackground: "#FFEEEE",
                        mathsize: "90%"
                    }
                },
                Safe: {
                    allow: {
                        URLs: "safe",
                        classes: "safe",
                        cssIDs: "safe",
                        styles: "safe",
                        fontsize: "all"
                    }
                }
            }, tex),
            messageStyle: "none"
        });
    };
		
    var converter = undefined;
	var ready = false; // true after initial typeset is complete
	var pending = false; // true when MathJax has been requested
	var preview = null; // the preview container
	var inline = "$"; // the inline math delimiter

	var blocks, start, end, last, braces; // used in searching for math
	var math; // stores math until markdone is done

	var HUB = MathJax.Hub;

	//
	// Runs after initial typeset
	// 
	HUB.Queue(function() {
		ready = true;
		HUB.processUpdateTime = 50; // reduce update time so that we can cancel
									// easier
		HUB.Config({ "HTML-CSS" : { EqnChunk : 10, EqnChunkFactor : 1 }, // reduce
																			// chunk
																			// for
																			// more
																			// frequent
																			// updates
		SVG : { EqnChunk : 10, EqnChunkFactor : 1 } });
	});

	//
	// The pattern for math delimiters and special symbols
	// needed for searching for math in the page.
	//
	var SPLIT = /(\$\$?|\\(?:begin|end)\{[a-z]*\*?\}|\\[\\{}$]|[{}]|(?:\n\s*)+|@@\d+@@)/i;

	//
	// The math is in blocks i through j, so
	// collect it into one block and clear the others.
	// Replace &, <, and > by named entities.
	// For IE, put <br> at the ends of comments since IE removes \n.
	// Clear the current math positions and store the index of the
	// math, then push the math string onto the storage array.
	//
	function processMath(i, j) {
		var block = blocks.slice(i, j + 1).join("").replace(/&/g, "&amp;") // use
																			// HTML
																			// entity
																			// for
																			// &
		.replace(/</g, "&lt;") // use HTML entity for <
		.replace(/>/g, "&gt;") // use HTML entity for >
		;
		if (HUB.Browser.isMSIE) {
			block = block.replace(/(%[^\n]*)\n/g, "$1<br/>\n")
		}
		while (j > i) {
			blocks[j] = "";
			j--
		}
		blocks[i] = "@@" + math.length + "@@";
		math.push(block);
		start = end = last = null;
	}

	//
	// Break up the text into its component parts and search
	// through them for math delimiters, braces, linebreaks, etc.
	// Math delimiters must match and braces must balance.
	// Don't allow math to pass through a double linebreak
	// (which will be a paragraph).
	//
	function removeMath(text) {
		start = end = last = null; // for tracking math delimiters
		math = []; // stores math strings for latter

		blocks = text.replace(/\r\n?/g, "\n").split(SPLIT);
		for ( var i = 1, m = blocks.length; i < m; i += 2) {
			var block = blocks[i];
			if (block.charAt(0) === "@") {
				//
				// Things that look like our math markers will get
				// stored and then retrieved along with the math.
				//
				blocks[i] = "@@" + math.length + "@@";
				math.push(block);
			} else if (start) {
				//
				// If we are in math, look for the end delimiter,
				// but don't go past double line breaks, and
				// and balance braces within the math.
				//
				if (block === end) {
					if (braces) {
						last = i
					} else {
						processMath(start, i)
					}
				} else if (block.match(/\n.*\n/)) {
					if (last) {
						i = last;
						processMath(start, i)
					}
					start = end = last = null;
					braces = 0;
				} else if (block === "{") {
					braces++
				} else if (block === "}" && braces) {
					braces--
				}
			} else {
				//
				// Look for math start delimiters and when
				// found, set up the end delimiter.
				//
				if (block === inline || block === "$$") {
					start = i;
					end = block;
					braces = 0;
				} else if (block.substr(1, 5) === "begin") {
					start = i;
					end = "\\end" + block.substr(6);
					braces = 0;
				}
			}
		}
		if (last) {
			processMath(start, last)
		}
		return blocks.join("");
	}

	//
	// Put back the math strings that were saved,
	// and clear the math array (no need to keep it around).
	//  
	function replaceMath(text) {
		text = text.replace(/@@(\d+)@@/g, function(match, n) {
			return math[n]
		});
		math = null;
		return text;
	}

	//
	// This is run to restart MathJax after it has finished
	// the previous run (that may have been canceled)
	//
	var afterRefreshCallback = undefined;
	function RestartMJ() {
		pending = false;
		HUB.cancelTypeset = false; // won't need to do this in the future
		HUB.Queue([ "Typeset", HUB, preview ]);
		HUB.Queue(afterRefreshCallback);
	}

	//
	// When the preview changes, cancel MathJax and restart,
	// if we haven't done that already.
	//
	function UpdateMJ() {
	    // sometimes ready flag is not set already (on opera basically)
		//if (!pending && ready) {
		if (!pending) {
			pending = true;
			HUB.Cancel();
			HUB.Queue(RestartMJ);
		}
	}

	//
	// Save the preview ID and the inline math delimiter.
	// Create a converter for the editor and register a preConversion hook
	// to handle escaping the math.
	// Create a preview refresh hook to handle starting MathJax.
	//
	mathJax.onEditorConfigure = function(editorObject) {
		preview = document.getElementById("preview-contents");

		converter = editorObject.getConverter();
		converter.hooks.chain("preConversion", removeMath);
		converter.hooks.chain("postConversion", replaceMath);
	};
	mathJax.onAsyncPreview = function(callback) {
		afterRefreshCallback = callback;
		UpdateMJ();
	};

	//
	// Set up MathJax to allow canceling of typesetting, if it
	// doesn't already have that.
	//
	if (!HUB.Cancel) {

		HUB.cancelTypeset = false;
		var CANCELMESSAGE = "MathJax Canceled";

		HUB.Register
			.StartupHook(
				"HTML-CSS Jax Config",
				function() {
					var HTMLCSS = MathJax.OutputJax["HTML-CSS"], TRANSLATE = HTMLCSS.Translate;
					HTMLCSS.Augment({ Translate : function(script, state) {
						if (HUB.cancelTypeset || state.cancelled) {
							throw Error(CANCELMESSAGE)
						}
						return TRANSLATE.call(HTMLCSS, script, state);
					} });
				});

		HUB.Register.StartupHook("SVG Jax Config", function() {
			var SVG = MathJax.OutputJax["SVG"], TRANSLATE = SVG.Translate;
			SVG.Augment({ Translate : function(script, state) {
				if (HUB.cancelTypeset || state.cancelled) {
					throw Error(CANCELMESSAGE)
				}
				return TRANSLATE.call(SVG, script, state);
			} });
		});

		HUB.Register.StartupHook("TeX Jax Config", function() {
			var TEX = MathJax.InputJax.TeX, TRANSLATE = TEX.Translate;
			TEX.Augment({ Translate : function(script, state) {
				if (HUB.cancelTypeset || state.cancelled) {
					throw Error(CANCELMESSAGE)
				}
				return TRANSLATE.call(TEX, script, state);
			} });
		});

		var PROCESSERROR = HUB.processError;
		HUB.processError = function(error, state, type) {
			if (error.message !== CANCELMESSAGE) {
				return PROCESSERROR.call(HUB, error, state, type)
			}
			MathJax.Message.Clear(0, 0);
			state.jaxIDs = [];
			state.jax = {};
			state.scripts = [];
			state.i = state.j = 0;
			state.cancelled = true;
			return null;
		};

		HUB.Cancel = function() {
			this.cancelTypeset = true
		};
	}

	return mathJax;
});